FOLDALIGN

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sortfalign


BiRC


Stormo lab

NAME

sortfalign -Sort foldalign format file by foldalign scores.  

SYNOPSIS

sortfalign [-n number] file  

OPTIONS

sorfalign accepts the following option.

-n number

The number of highest scoring alignments to show. Default (not used) is all alignments. Uses data in the foldalign data format.

AUTHORS

Laurie J. Heyer and Jan Gorodkin
(laheyer@davidson.edu and gorodkin@bioinf.au.dk)

REFERENCES

For any use of FOLDALIGN programs please cite:

J. Gorodkin, L. J. Heyer and G. D. Stormo. Finding the most significant common sequence and structure motifs in a set of RNA sequences. Nucleic Acids Research, 25:18, 3724-3732, 1997.

J. Gorodkin, L. J. Heyer and G. D. Stormo. Finding Common Sequence and Structure Motifs in a set of RNA sequences. Proceedings ISMB-97, pp. 120-123, 1997.

CONTACT

If you have questions, bug reports, complaints, comments, requests, email foldalign@bioinf.au.dk.

SEE ALSO

FOLDALIGN, fa2col, prefilter, mainfilter, makefamatrix, genmatrix

Index

NAME

SYNOPSIS

OPTIONS

AUTHORS

REFERENCES

CONTACT

SEE ALSO

Comments, questions, etc., email foldalign@bioinf.au.dk