Welcome to the GreenGenie2 example submission form!
Reference:Kwan AL, Li L, Kulp DC, Dutcher SK, Stormo GD: Improving Gene-finding in Chlamydomonas reinhardtii: GreenGenie2. BMC Genomics 2009, 10:210
Here's an example DNA sequence in FASTA format to get you started! Note that, since this example uses the custom track feature, the example sequence provided here is the plus strand and GreenGenie2 is asked to make predictions on both strands.
Now, indicate how many genes you expect to be in the input sequence.
Do you want predictions on one or both strands?
Chlre4 parameters are provided as a potential source of alternate gene models. Short-sequence prediction performance is comparable to the default (Chlre3).
Specify the number of characters per fasta row.
You can also enter a header for the JGI Custom Track Import Tool! GreenGenie2 will adjust the prediction for you! Then, just copy the text as instructed and paste the pre-formatted GreenGenie2 prediction at JGI to see your own custom track! The appropriate Chlre4 assembly header has already been provided for this example.Once more, for proper automated generation of custom track code, the example DNA sequence above is from the plus strand.